{
"_id": "6a103f2dacfb0bcc41c9ccb7",
"Package": "tinyarray",
"Type": "Package",
"Title": "Expression Data Analysis and Visualization",
"Version": "2.4.2",
"Authors@R": "person(\"Xiaojie\", \"Sun\", email = \"18763899370@163.com\", role = c(\"aut\", \"cre\"))",
"Maintainer": "Xiaojie Sun <18763899370@163.com>",
"Description": "The Gene Expression Omnibus\n() and The Cancer Genome\nAtlas () are widely used\nmedical public databases. Our platform integrates routine\nanalysis and visualization tools for expression data to provide\nconcise and intuitive data analysis and presentation.",
"License": "MIT + file LICENSE",
"Encoding": "UTF-8",
"LazyData": "true",
"URL": "https://github.com/xjsun1221/tinyarray",
"BugReports": "https://github.com/xjsun1221/tinyarray/issues",
"RoxygenNote": "7.3.1",
"Config/pak/sysreqs": "libcairo2-dev cmake libfontconfig1-dev\nlibfreetype6-dev libglpk-dev make libicu-dev libjpeg-dev\nlibpng-dev libuv1-dev libxml2-dev libssl-dev zlib1g-dev",
"Repository": "https://xjsun1221.r-universe.dev",
"Date/Publication": "2024-06-13 10:52:41 UTC",
"RemoteUrl": "https://github.com/xjsun1221/tinyarray",
"RemoteRef": "HEAD",
"RemoteSha": "e1b5df306627ad7e11d93278ec64a67ae80cd299",
"NeedsCompilation": "no",
"Packaged": {
"Date": "2026-05-11 09:04:38 UTC",
"User": "root"
},
"Author": "Xiaojie Sun [aut, cre]",
"MD5sum": "9a4777742571b66864d363166b6a441f",
"_user": "xjsun1221",
"_type": "src",
"_file": "tinyarray_2.4.2.tar.gz",
"_fileid": "cbb3c17fecd984c8c415712e71393846d7fec354c3ba19b797829b1dc0447ce0",
"_filesize": 2134031,
"_sha256": "cbb3c17fecd984c8c415712e71393846d7fec354c3ba19b797829b1dc0447ce0",
"_created": "2026-05-11T09:04:38.000Z",
"_published": "2026-05-22T11:34:05.470Z",
"_distro": "noble",
"_jobs": [
{
"job": 77370971278,
"time": 396,
"config": "linux-devel-x86_64",
"r": "4.7.0",
"check": "OK",
"artifact": "6914557747"
},
{
"job": 77370971361,
"time": 386,
"config": "linux-release-x86_64",
"r": "4.6.0",
"check": "OK",
"artifact": "6914554057"
},
{
"job": 77370970862,
"time": 351,
"config": "macos-oldrel-arm64",
"r": "4.5.3",
"check": "OK",
"artifact": "6914534378"
},
{
"job": 77370970990,
"time": 342,
"config": "macos-release-arm64",
"r": "4.6.0",
"check": "OK",
"artifact": "6914530079"
},
{
"job": 77370970893,
"time": 366,
"config": "source",
"r": "4.6.0",
"check": "OK",
"artifact": "6914421209"
},
{
"job": 77370970557,
"time": 258,
"config": "wasm-release",
"r": "4.6.0",
"check": "OK",
"artifact": "7159496738"
},
{
"job": 77370970925,
"time": 291,
"config": "windows-devel",
"r": "4.7.0",
"check": "OK",
"artifact": "6914521935"
},
{
"job": 77370971208,
"time": 284,
"config": "windows-oldrel",
"r": "4.5.3",
"check": "OK",
"artifact": "6914520374"
},
{
"job": 77370971322,
"time": 282,
"config": "windows-release",
"r": "4.6.0",
"check": "OK",
"artifact": "6914518330"
}
],
"_buildurl": "https://github.com/r-universe/xjsun1221/actions/runs/25660497073",
"_status": "success",
"_host": "GitHub-Actions",
"_upstream": "https://github.com/xjsun1221/tinyarray",
"_commit": {
"id": "e1b5df306627ad7e11d93278ec64a67ae80cd299",
"author": "xjsun1221 ",
"committer": "xjsun1221 ",
"message": "add new file\n",
"time": 1718275961
},
"_maintainer": {
"name": "Xiaojie Sun",
"email": "18763899370@163.com",
"login": "xiaojiesun",
"uuid": 46116685
},
"_registered": true,
"_dependencies": [
{
"package": "R",
"version": ">= 4.1.0",
"role": "Depends"
},
{
"package": "BiocManager",
"role": "Imports"
},
{
"package": "clusterProfiler",
"role": "Imports"
},
{
"package": "dplyr",
"role": "Imports"
},
{
"package": "limma",
"role": "Imports"
},
{
"package": "stringr",
"role": "Imports"
},
{
"package": "tibble",
"role": "Imports"
},
{
"package": "pheatmap",
"role": "Imports"
},
{
"package": "ggplot2",
"role": "Imports"
},
{
"package": "survival",
"role": "Imports"
},
{
"package": "Hmisc",
"role": "Imports"
},
{
"package": "survminer",
"role": "Imports"
},
{
"package": "patchwork",
"role": "Imports"
},
{
"package": "testthat",
"role": "Suggests"
},
{
"package": "AnnoProbe",
"role": "Suggests"
},
{
"package": "GEOquery",
"role": "Suggests"
},
{
"package": "Biobase",
"role": "Suggests"
},
{
"package": "VennDiagram",
"role": "Suggests"
},
{
"package": "FactoMineR",
"role": "Suggests"
},
{
"package": "factoextra",
"role": "Suggests"
},
{
"package": "knitr",
"role": "Suggests"
},
{
"package": "rmarkdown",
"role": "Suggests"
},
{
"package": "cowplot",
"role": "Suggests"
},
{
"package": "ggpubr",
"role": "Suggests"
},
{
"package": "ggplotify",
"role": "Suggests"
},
{
"package": "tidyr",
"role": "Suggests"
},
{
"package": "labeling",
"role": "Suggests"
},
{
"package": "Rtsne",
"role": "Suggests"
},
{
"package": "scatterplot3d",
"role": "Suggests"
},
{
"package": "ComplexHeatmap",
"role": "Suggests"
},
{
"package": "circlize",
"role": "Suggests"
},
{
"package": "org.Rn.eg.db",
"role": "Suggests"
},
{
"package": "org.Mm.eg.db",
"role": "Suggests"
},
{
"package": "org.Hs.eg.db",
"role": "Suggests"
}
],
"_owner": "xjsun1221",
"_selfowned": true,
"_usedby": 0,
"_updates": [],
"_tags": [],
"_stars": 102,
"_contributors": [
{
"user": "xjsun1221",
"count": 119,
"uuid": 58470952
},
{
"user": "bioinfoplanet",
"count": 59,
"uuid": 41578095
}
],
"_userbio": {
"uuid": 58470952,
"type": "user",
"name": "Xiaojie Sun",
"description": "instructor of biotrainee（WeChat public account）\r\nCo-founder of bioinfoplanet（WeChat public account）\r\nauthor in jianshu.com"
},
"_downloads": {
"count": 861,
"source": "https://cranlogs.r-pkg.org/downloads/total/last-month/tinyarray"
},
"_devurl": "https://github.com/xjsun1221/tinyarray",
"_searchresults": 109,
"_rbuild": "4.6.0",
"_assets": [
"extra/citation.cff",
"extra/citation.html",
"extra/citation.json",
"extra/citation.txt",
"extra/contents.json",
"extra/NEWS.html",
"extra/NEWS.txt",
"extra/readme.html",
"extra/readme.md",
"extra/tinyarray.html",
"manual.pdf"
],
"_homeurl": "https://github.com/xjsun1221/tinyarray",
"_realowner": "xjsun1221",
"_cranurl": true,
"_releases": [
{
"version": "2.2.6",
"date": "2021-09-14"
},
{
"version": "2.2.7",
"date": "2021-11-08"
},
{
"version": "2.2.9",
"date": "2023-03-04"
},
{
"version": "2.3.0",
"date": "2023-04-24"
},
{
"version": "2.3.1",
"date": "2023-08-18"
},
{
"version": "2.3.2",
"date": "2024-01-22"
},
{
"version": "2.3.3",
"date": "2024-04-09"
},
{
"version": "2.4.1",
"date": "2024-06-04"
},
{
"version": "2.4.2",
"date": "2024-06-14"
},
{
"version": "2.4.3",
"date": "2025-03-05"
}
],
"_exports": [
"box_surv",
"cor.full",
"cor.one",
"corheatmap",
"corscatterplot",
"double_enrich",
"draw_boxplot",
"draw_heatmap",
"draw_heatmap2",
"draw_KM",
"draw_pca",
"draw_tsne",
"draw_venn",
"draw_volcano",
"draw_volcano2",
"dumd",
"edges_to_nodes",
"exp_boxplot",
"exp_surv",
"find_anno",
"geo_download",
"get_cgs",
"get_count_txt",
"get_deg",
"get_deg_all",
"get_gpl_txt",
"ggheat",
"hypertest",
"interaction_to_edges",
"intersect_all",
"make_tcga_group",
"match_exp_cl",
"multi_deg",
"multi_deg_all",
"plcortest",
"plot_deg",
"point_cut",
"quick_enrich",
"risk_plot",
"sam_filter",
"surv_cox",
"surv_KM",
"t_choose",
"trans_array",
"trans_entrezexp",
"trans_exp",
"trans_exp_new",
"union_all"
],
"_datasets": [
{
"name": "cod",
"title": "cod",
"object": "cod",
"class": [
"matrix",
"array"
],
"fields": [
"TCGA-3L-AA1B-01A",
"TCGA-4N-A93T-01A",
"TCGA-4T-AA8H-01A",
"TCGA-5M-AAT4-01A",
"TCGA-5M-AAT5-01A",
"TCGA-5M-AAT6-01A",
"TCGA-5M-AATA-01A",
"TCGA-5M-AATE-01A",
"TCGA-A6-2671-01A",
"TCGA-A6-2671-11A",
"TCGA-A6-2672-01A",
"TCGA-A6-2672-01B",
"TCGA-A6-2674-01A",
"TCGA-A6-2674-01B",
"TCGA-A6-2675-01A",
"TCGA-A6-2675-11A",
"TCGA-A6-2676-01A",
"TCGA-A6-2677-01A",
"TCGA-A6-2677-01B",
"TCGA-A6-2678-01A",
"TCGA-A6-2678-11A",
"TCGA-A6-2679-01A",
"TCGA-A6-2679-11A",
"TCGA-A6-2680-01A",
"TCGA-A6-2680-11A",
"TCGA-A6-2681-01A",
"TCGA-A6-2682-01A",
"TCGA-A6-2682-11A",
"TCGA-A6-2683-01A",
"TCGA-A6-2683-11A",
"TCGA-A6-2684-01A",
"TCGA-A6-2684-01C",
"TCGA-A6-2684-11A",
"TCGA-A6-2685-01A",
"TCGA-A6-2685-11A",
"TCGA-A6-2686-01A",
"TCGA-A6-2686-11A",
"TCGA-A6-3807-01A",
"TCGA-A6-3808-01A",
"TCGA-A6-3809-01A",
"TCGA-A6-3809-01B",
"TCGA-A6-3810-01A",
"TCGA-A6-3810-01B",
"TCGA-A6-4105-01A",
"TCGA-A6-4107-01A",
"TCGA-A6-5656-01A",
"TCGA-A6-5656-01B",
"TCGA-A6-5657-01A",
"TCGA-A6-5659-01A",
"TCGA-A6-5659-01B",
"TCGA-A6-5659-11A",
"TCGA-A6-5660-01A",
"TCGA-A6-5661-01A",
"TCGA-A6-5661-01B",
"TCGA-A6-5662-01A",
"TCGA-A6-5662-11A",
"TCGA-A6-5664-01A",
"TCGA-A6-5665-01A",
"TCGA-A6-5665-01B",
"TCGA-A6-5665-11A",
"TCGA-A6-5666-01A",
"TCGA-A6-5667-01A",
"TCGA-A6-5667-11A",
"TCGA-A6-6137-01A",
"TCGA-A6-6138-01A",
"TCGA-A6-6140-01A",
"TCGA-A6-6141-01A",
"TCGA-A6-6142-01A",
"TCGA-A6-6648-01A",
"TCGA-A6-6649-01A",
"TCGA-A6-6650-01A",
"TCGA-A6-6650-01B",
"TCGA-A6-6651-01A",
"TCGA-A6-6652-01A",
"TCGA-A6-6653-01A",
"TCGA-A6-6654-01A",
"TCGA-A6-6780-01A",
"TCGA-A6-6780-01B",
"TCGA-A6-6781-01A",
"TCGA-A6-6781-01B",
"TCGA-A6-6782-01A",
"TCGA-A6-A565-01A",
"TCGA-A6-A566-01A",
"TCGA-A6-A567-01A",
"TCGA-A6-A56B-01A",
"TCGA-A6-A5ZU-01A",
"TCGA-AA-3488-01A",
"TCGA-AA-3489-01A",
"TCGA-AA-3489-11A",
"TCGA-AA-3492-01A",
"TCGA-AA-3494-01A",
"TCGA-AA-3495-01A",
"TCGA-AA-3496-01A",
"TCGA-AA-3496-11A",
"TCGA-AA-3502-01A",
"TCGA-AA-3506-01A",
"TCGA-AA-3509-01A",
"TCGA-AA-3510-01A",
"TCGA-AA-3511-01A",
"TCGA-AA-3511-11A",
"TCGA-AA-3514-01A",
"TCGA-AA-3514-11A",
"TCGA-AA-3516-01A",
"TCGA-AA-3516-11A",
"TCGA-AA-3517-01A",
"TCGA-AA-3517-11A",
"TCGA-AA-3518-01A",
"TCGA-AA-3518-11A",
"TCGA-AA-3519-01A",
"TCGA-AA-3520-01A",
"TCGA-AA-3520-11A",
"TCGA-AA-3521-01A",
"TCGA-AA-3522-01A",
"TCGA-AA-3522-11A",
"TCGA-AA-3524-01A",
"TCGA-AA-3525-01A",
"TCGA-AA-3525-11A",
"TCGA-AA-3526-01A",
"TCGA-AA-3527-01A",
"TCGA-AA-3527-11A",
"TCGA-AA-3529-01A",
"TCGA-AA-3530-01A",
"TCGA-AA-3531-01A",
"TCGA-AA-3531-11A",
"TCGA-AA-3532-01A",
"TCGA-AA-3534-01A",
"TCGA-AA-3534-11A",
"TCGA-AA-3538-01A",
"TCGA-AA-3542-01A",
"TCGA-AA-3543-01A",
"TCGA-AA-3544-01A",
"TCGA-AA-3548-01A",
"TCGA-AA-3549-01A",
"TCGA-AA-3552-01A",
"TCGA-AA-3553-01A",
"TCGA-AA-3554-01A",
"TCGA-AA-3555-01A",
"TCGA-AA-3556-01A",
"TCGA-AA-3560-01A",
"TCGA-AA-3561-01A",
"TCGA-AA-3562-01A",
"TCGA-AA-3655-01A",
"TCGA-AA-3655-11A",
"TCGA-AA-3660-01A",
"TCGA-AA-3660-11A",
"TCGA-AA-3662-01A",
"TCGA-AA-3662-11A",
"TCGA-AA-3663-01A",
"TCGA-AA-3663-11A",
"TCGA-AA-3664-01A",
"TCGA-AA-3666-01A",
"TCGA-AA-3667-01A",
"TCGA-AA-3672-01A",
"TCGA-AA-3673-01A",
"TCGA-AA-3675-01A",
"TCGA-AA-3678-01A",
"TCGA-AA-3679-01A",
"TCGA-AA-3680-01A",
"TCGA-AA-3681-01A",
"TCGA-AA-3684-01A",
"TCGA-AA-3685-01A",
"TCGA-AA-3688-01A",
"TCGA-AA-3692-01A",
"TCGA-AA-3693-01A",
"TCGA-AA-3696-01A",
"TCGA-AA-3697-01A",
"TCGA-AA-3697-11A",
"TCGA-AA-3710-01A",
"TCGA-AA-3712-01A",
"TCGA-AA-3712-11A",
"TCGA-AA-3713-01A",
"TCGA-AA-3713-11A",
"TCGA-AA-3715-01A",
"TCGA-AA-3811-01A",
"TCGA-AA-3812-01A",
"TCGA-AA-3814-01A",
"TCGA-AA-3815-01A",
"TCGA-AA-3818-01A",
"TCGA-AA-3819-01A",
"TCGA-AA-3821-01A",
"TCGA-AA-3831-01A",
"TCGA-AA-3833-01A",
"TCGA-AA-3837-01A",
"TCGA-AA-3841-01A",
"TCGA-AA-3842-01A",
"TCGA-AA-3844-01A",
"TCGA-AA-3845-01A",
"TCGA-AA-3846-01A",
"TCGA-AA-3848-01A",
"TCGA-AA-3850-01A",
"TCGA-AA-3851-01A",
"TCGA-AA-3852-01A",
"TCGA-AA-3854-01A",
"TCGA-AA-3855-01A",
"TCGA-AA-3856-01A",
"TCGA-AA-3858-01A",
"TCGA-AA-3860-01A",
"TCGA-AA-3861-01A",
"TCGA-AA-3862-01A",
"TCGA-AA-3864-01A",
"TCGA-AA-3866-01A",
"TCGA-AA-3867-01A",
"TCGA-AA-3869-01A",
"TCGA-AA-3870-01A",
"TCGA-AA-3872-01A",
"TCGA-AA-3875-01A",
"TCGA-AA-3877-01A",
"TCGA-AA-3930-01A",
"TCGA-AA-3939-01A",
"TCGA-AA-3941-01A",
"TCGA-AA-3947-01A",
"TCGA-AA-3949-01A",
"TCGA-AA-3950-01A",
"TCGA-AA-3952-01A",
"TCGA-AA-3955-01A",
"TCGA-AA-3956-01A",
"TCGA-AA-3966-01A",
"TCGA-AA-3968-01A",
"TCGA-AA-3970-01A",
"TCGA-AA-3971-01A",
"TCGA-AA-3972-01A",
"TCGA-AA-3973-01A",
"TCGA-AA-3975-01A",
"TCGA-AA-3976-01A",
"TCGA-AA-3977-01A",
"TCGA-AA-3979-01A",
"TCGA-AA-3980-01A",
"TCGA-AA-3982-01A",
"TCGA-AA-3984-01A",
"TCGA-AA-3986-01A",
"TCGA-AA-3989-01A",
"TCGA-AA-3994-01A",
"TCGA-AA-A004-01A",
"TCGA-AA-A00A-01A",
"TCGA-AA-A00D-01A",
"TCGA-AA-A00E-01A",
"TCGA-AA-A00F-01A",
"TCGA-AA-A00J-01A",
"TCGA-AA-A00K-01A",
"TCGA-AA-A00L-01A",
"TCGA-AA-A00N-01A",
"TCGA-AA-A00O-01A",
"TCGA-AA-A00Q-01A",
"TCGA-AA-A00R-01A",
"TCGA-AA-A00U-01A",
"TCGA-AA-A00W-01A",
"TCGA-AA-A00Z-01A",
"TCGA-AA-A010-01A",
"TCGA-AA-A017-01A",
"TCGA-AA-A01C-01A",
"TCGA-AA-A01D-01A",
"TCGA-AA-A01F-01A",
"TCGA-AA-A01G-01A",
"TCGA-AA-A01I-01A",
"TCGA-AA-A01K-01A",
"TCGA-AA-A01P-01A",
"TCGA-AA-A01Q-01A",
"TCGA-AA-A01R-01A",
"TCGA-AA-A01S-01A",
"TCGA-AA-A01T-01A",
"TCGA-AA-A01V-01A",
"TCGA-AA-A01X-01A",
"TCGA-AA-A01Z-01A",
"TCGA-AA-A022-01A",
"TCGA-AA-A024-01A",
"TCGA-AA-A029-01A",
"TCGA-AA-A02E-01A",
"TCGA-AA-A02F-01A",
"TCGA-AA-A02H-01A",
"TCGA-AA-A02J-01A",
"TCGA-AA-A02K-01A",
"TCGA-AA-A02O-01A",
"TCGA-AA-A02R-01A",
"TCGA-AA-A02W-01A",
"TCGA-AA-A02Y-01A",
"TCGA-AA-A03F-01A",
"TCGA-AA-A03J-01A",
"TCGA-AD-5900-01A",
"TCGA-AD-6548-01A",
"TCGA-AD-6888-01A",
"TCGA-AD-6889-01A",
"TCGA-AD-6890-01A",
"TCGA-AD-6895-01A",
"TCGA-AD-6899-01A",
"TCGA-AD-6901-01A",
"TCGA-AD-6963-01A",
"TCGA-AD-6964-01A",
"TCGA-AD-6965-01A",
"TCGA-AD-A5EJ-01A",
"TCGA-AD-A5EK-01A",
"TCGA-AM-5820-01A",
"TCGA-AM-5821-01A",
"TCGA-AU-3779-01A",
"TCGA-AU-6004-01A",
"TCGA-AY-4070-01A",
"TCGA-AY-4071-01A",
"TCGA-AY-5543-01A",
"TCGA-AY-6196-01A",
"TCGA-AY-6197-01A",
"TCGA-AY-6386-01A",
"TCGA-AY-A54L-01A",
"TCGA-AY-A69D-01A",
"TCGA-AY-A71X-01A",
"TCGA-AY-A8YK-01A",
"TCGA-AZ-4308-01A",
"TCGA-AZ-4313-01A",
"TCGA-AZ-4315-01A",
"TCGA-AZ-4323-01A",
"TCGA-AZ-4614-01A",
"TCGA-AZ-4615-01A",
"TCGA-AZ-4616-01A",
"TCGA-AZ-4682-01B",
"TCGA-AZ-4684-01A",
"TCGA-AZ-5403-01A",
"TCGA-AZ-5407-01A",
"TCGA-AZ-6598-01A",
"TCGA-AZ-6598-11A",
"TCGA-AZ-6599-01A",
"TCGA-AZ-6599-11A",
"TCGA-AZ-6600-01A",
"TCGA-AZ-6600-11A",
"TCGA-AZ-6601-01A",
"TCGA-AZ-6601-11A",
"TCGA-AZ-6603-01A",
"TCGA-AZ-6603-11A",
"TCGA-AZ-6605-01A",
"TCGA-AZ-6605-11A",
"TCGA-AZ-6606-01A",
"TCGA-AZ-6607-01A",
"TCGA-AZ-6608-01A",
"TCGA-CA-5254-01A",
"TCGA-CA-5255-01A",
"TCGA-CA-5256-01A",
"TCGA-CA-5796-01A",
"TCGA-CA-5797-01A",
"TCGA-CA-6715-01A",
"TCGA-CA-6716-01A",
"TCGA-CA-6717-01A",
"TCGA-CA-6718-01A",
"TCGA-CA-6719-01A",
"TCGA-CK-4947-01B",
"TCGA-CK-4948-01B",
"TCGA-CK-4950-01A",
"TCGA-CK-4951-01A",
"TCGA-CK-4952-01A",
"TCGA-CK-5912-01A",
"TCGA-CK-5913-01A",
"TCGA-CK-5914-01A",
"TCGA-CK-5915-01A",
"TCGA-CK-5916-01A",
"TCGA-CK-6746-01A",
"TCGA-CK-6747-01A",
"TCGA-CK-6748-01A",
"TCGA-CK-6751-01A",
"TCGA-CM-4743-01A",
"TCGA-CM-4744-01A",
"TCGA-CM-4746-01A",
"TCGA-CM-4747-01A",
"TCGA-CM-4748-01A",
"TCGA-CM-4750-01A",
"TCGA-CM-4751-01A",
"TCGA-CM-4752-01A",
"TCGA-CM-5341-01A",
"TCGA-CM-5344-01A",
"TCGA-CM-5348-01A",
"TCGA-CM-5349-01A",
"TCGA-CM-5860-01A",
"TCGA-CM-5861-01A",
"TCGA-CM-5862-01A",
"TCGA-CM-5863-01A",
"TCGA-CM-5864-01A",
"TCGA-CM-5868-01A",
"TCGA-CM-6161-01A",
"TCGA-CM-6162-01A",
"TCGA-CM-6163-01A",
"TCGA-CM-6164-01A",
"TCGA-CM-6165-01A",
"TCGA-CM-6166-01A",
"TCGA-CM-6167-01A",
"TCGA-CM-6168-01A",
"TCGA-CM-6169-01A",
"TCGA-CM-6170-01A",
"TCGA-CM-6171-01A",
"TCGA-CM-6172-01A",
"TCGA-CM-6674-01A",
"TCGA-CM-6675-01A",
"TCGA-CM-6676-01A",
"TCGA-CM-6677-01A",
"TCGA-CM-6678-01A",
"TCGA-CM-6679-01A",
"TCGA-CM-6680-01A",
"TCGA-D5-5537-01A",
"TCGA-D5-5538-01A",
"TCGA-D5-5539-01A",
"TCGA-D5-5540-01A",
"TCGA-D5-5541-01A",
"TCGA-D5-6529-01A",
"TCGA-D5-6530-01A",
"TCGA-D5-6531-01A",
"TCGA-D5-6532-01A",
"TCGA-D5-6533-01A",
"TCGA-D5-6534-01A",
"TCGA-D5-6535-01A",
"TCGA-D5-6536-01A",
"TCGA-D5-6537-01A",
"TCGA-D5-6538-01A",
"TCGA-D5-6539-01A",
"TCGA-D5-6540-01A",
"TCGA-D5-6541-01A",
"TCGA-D5-6898-01A",
"TCGA-D5-6920-01A",
"TCGA-D5-6922-01A",
"TCGA-D5-6923-01A",
"TCGA-D5-6924-01A",
"TCGA-D5-6926-01A",
"TCGA-D5-6927-01A",
"TCGA-D5-6928-01A",
"TCGA-D5-6929-01A",
"TCGA-D5-6930-01A",
"TCGA-D5-6931-01A",
"TCGA-D5-6932-01A",
"TCGA-D5-7000-01A",
"TCGA-DM-A0X9-01A",
"TCGA-DM-A0XD-01A",
"TCGA-DM-A0XF-01A",
"TCGA-DM-A1D0-01A",
"TCGA-DM-A1D4-01A",
"TCGA-DM-A1D6-01A",
"TCGA-DM-A1D7-01A",
"TCGA-DM-A1D8-01A",
"TCGA-DM-A1D9-01A",
"TCGA-DM-A1DA-01A",
"TCGA-DM-A1DB-01A",
"TCGA-DM-A1HA-01A",
"TCGA-DM-A1HB-01A",
"TCGA-DM-A280-01A",
"TCGA-DM-A282-01A",
"TCGA-DM-A285-01A",
"TCGA-DM-A288-01A",
"TCGA-DM-A28A-01A",
"TCGA-DM-A28C-01A",
"TCGA-DM-A28E-01A",
"TCGA-DM-A28F-01A",
"TCGA-DM-A28G-01A",
"TCGA-DM-A28H-01A",
"TCGA-DM-A28K-01A",
"TCGA-DM-A28M-01A",
"TCGA-F4-6459-01A",
"TCGA-F4-6460-01A",
"TCGA-F4-6461-01A",
"TCGA-F4-6463-01A",
"TCGA-F4-6569-01A",
"TCGA-F4-6570-01A",
"TCGA-F4-6703-01A",
"TCGA-F4-6704-01A",
"TCGA-F4-6704-11A",
"TCGA-F4-6805-01A",
"TCGA-F4-6806-01A",
"TCGA-F4-6807-01A",
"TCGA-F4-6808-01A",
"TCGA-F4-6809-01A",
"TCGA-F4-6854-01A",
"TCGA-F4-6855-01A",
"TCGA-F4-6856-01A",
"TCGA-G4-6293-01A",
"TCGA-G4-6294-01A",
"TCGA-G4-6295-01A",
"TCGA-G4-6297-01A",
"TCGA-G4-6298-01A",
"TCGA-G4-6299-01A",
"TCGA-G4-6302-01A",
"TCGA-G4-6303-01A",
"TCGA-G4-6304-01A",
"TCGA-G4-6306-01A",
"TCGA-G4-6307-01A",
"TCGA-G4-6309-01A",
"TCGA-G4-6310-01A",
"TCGA-G4-6311-01A",
"TCGA-G4-6314-01A",
"TCGA-G4-6315-01A",
"TCGA-G4-6317-01A",
"TCGA-G4-6317-02A",
"TCGA-G4-6320-01A",
"TCGA-G4-6321-01A",
"TCGA-G4-6322-01A",
"TCGA-G4-6323-01A",
"TCGA-G4-6586-01A",
"TCGA-G4-6588-01A",
"TCGA-G4-6625-01A",
"TCGA-G4-6626-01A",
"TCGA-G4-6627-01A",
"TCGA-G4-6628-01A",
"TCGA-NH-A50T-01A",
"TCGA-NH-A50U-01A",
"TCGA-NH-A50V-01A",
"TCGA-NH-A5IV-01A",
"TCGA-NH-A6GA-01A",
"TCGA-NH-A6GB-01A",
"TCGA-NH-A6GC-01A",
"TCGA-NH-A8F7-01A",
"TCGA-NH-A8F7-06A",
"TCGA-NH-A8F8-01A",
"TCGA-QG-A5YV-01A",
"TCGA-QG-A5YW-01A",
"TCGA-QG-A5YX-01A",
"TCGA-QG-A5Z1-01A",
"TCGA-QG-A5Z2-01A",
"TCGA-QL-A97D-01A",
"TCGA-RU-A8FL-01A",
"TCGA-SS-A7HO-01A",
"TCGA-T9-A92H-01A",
"TCGA-WS-AB45-01A"
],
"rows": 100,
"table": true,
"tojson": true
},
{
"name": "deg",
"title": "deg",
"object": "deg",
"class": [
"data.frame"
],
"fields": [
"logFC",
"AveExpr",
"t",
"P.Value",
"adj.P.Val",
"B",
"probe_id",
"symbol",
"change",
"ENTREZID"
],
"rows": 18591,
"table": true,
"tojson": true
},
{
"name": "deseq_data",
"title": "deseq_data",
"object": "deseq_data",
"class": [
"data.frame"
],
"fields": [
"baseMean",
"log2FoldChange",
"lfcSE",
"stat",
"pvalue",
"padj"
],
"rows": 552,
"table": true,
"tojson": true
},
{
"name": "exists_anno_list",
"title": "exists_anno_list",
"object": "exists_anno_list",
"class": [
"character"
],
"fields": [],
"table": false,
"tojson": true
},
{
"name": "exp_hub1",
"title": "exp_hub1",
"object": "exp_hub1",
"class": [
"matrix",
"array"
],
"fields": [
"GTEX-S33H-1226-SM-4AD69",
"GTEX-VJYA-0826-SM-4KL1M",
"TCGA-FB-A545-01",
"GTEX-ZF3C-2026-SM-4WWB5",
"GTEX-XUW1-1726-SM-4BOOZ",
"GTEX-OOBJ-1026-SM-3NB2L",
"TCGA-XD-AAUL-01",
"TCGA-RL-AAAS-01",
"TCGA-FB-A7DR-01",
"TCGA-YB-A89D-01",
"TCGA-IB-7890-01",
"TCGA-HZ-7922-01",
"GTEX-ZLFU-0726-SM-57WF6",
"GTEX-QEL4-1326-SM-447AD",
"TCGA-Q3-A5QY-01",
"GTEX-11DXX-0926-SM-5H112",
"GTEX-ZAB4-1726-SM-5HL8C",
"GTEX-145ME-0326-SM-5S2QO",
"GTEX-YB5E-0526-SM-4VDSD",
"TCGA-OE-A75W-01",
"GTEX-12WSG-1026-SM-5EGII",
"TCGA-FB-AAQ3-01",
"GTEX-ZV7C-0726-SM-59HKH",
"TCGA-HZ-7919-01",
"GTEX-V1D1-0726-SM-4JBH7",
"TCGA-IB-7649-01",
"GTEX-TKQ2-0426-SM-4DXUO",
"GTEX-RWS6-1126-SM-47JXC",
"TCGA-XD-AAUG-01",
"GTEX-145MO-2126-SM-5Q5CZ",
"GTEX-13W3W-1026-SM-5IFG4",
"TCGA-2J-AABI-01",
"GTEX-N7MT-1626-SM-3LK71",
"TCGA-HZ-A4BH-01",
"TCGA-2L-AAQL-01",
"GTEX-131XG-1426-SM-5GCMO",
"TCGA-FB-AAQ0-01",
"TCGA-3A-A9IX-01",
"TCGA-3A-A9IO-01",
"GTEX-11XUK-0626-SM-5N9ES",
"GTEX-QLQW-0326-SM-447A8",
"GTEX-T8EM-0826-SM-4DM76",
"TCGA-FB-AAPZ-01",
"TCGA-US-A776-01",
"TCGA-XD-AAUH-01",
"TCGA-XN-A8T5-01",
"TCGA-H6-A45N-01",
"GTEX-ZZPU-0726-SM-5N9C8",
"TCGA-IB-8126-01",
"TCGA-HZ-7920-01",
"TCGA-FB-AAQ6-01",
"GTEX-ZLWG-0326-SM-4WWC7",
"TCGA-HV-A5A3-11",
"GTEX-Y3IK-0426-SM-4WWE2",
"TCGA-S4-A8RM-01",
"TCGA-HZ-8002-01",
"TCGA-3A-A9IH-01",
"GTEX-YEC3-0626-SM-4YCFE",
"GTEX-13N11-0226-SM-5KM3C",
"TCGA-LB-A8F3-01",
"TCGA-F2-A44H-01",
"TCGA-HZ-A4BK-01",
"TCGA-IB-7889-01",
"TCGA-FB-A4P6-01",
"GTEX-X4LF-0326-SM-4QAS9",
"TCGA-FB-AAQ1-01",
"GTEX-13FTW-0526-SM-5IFIP",
"GTEX-11ILO-1526-SM-5A5KZ",
"TCGA-F2-6879-01",
"TCGA-3A-A9IB-01",
"TCGA-HZ-A9TJ-01",
"TCGA-US-A77J-01",
"TCGA-HZ-A9TJ-06",
"GTEX-11TT1-0326-SM-5LUAY",
"TCGA-HZ-7289-01",
"GTEX-13OVI-0526-SM-5IFFQ",
"TCGA-3A-A9J0-01",
"GTEX-145MN-1426-SM-5SI9H",
"GTEX-XPVG-0326-SM-4B653",
"TCGA-IB-AAUQ-01",
"GTEX-ZAK1-2326-SM-5CVMY",
"TCGA-HZ-A49H-01",
"GTEX-ZDYS-2526-SM-4WKGU",
"GTEX-XXEK-1726-SM-4BRVB",
"GTEX-Y8E4-1326-SM-5IFIY",
"TCGA-Z5-AAPL-01",
"GTEX-ZP4G-0426-SM-4YCER",
"TCGA-3A-A9IR-01",
"GTEX-WHSB-0726-SM-4M1XQ",
"TCGA-IB-AAUM-01",
"TCGA-3A-A9IL-01",
"GTEX-146FQ-1526-SM-5Q5CX",
"GTEX-V955-0326-SM-4JBGV",
"GTEX-13PL7-2226-SM-5L3IC",
"GTEX-12WSD-1626-SM-5GCNR",
"TCGA-IB-7886-01",
"TCGA-IB-A6UF-01",
"TCGA-FB-AAPY-01",
"TCGA-2J-AAB6-01",
"TCGA-2J-AABH-01",
"TCGA-H6-8124-01",
"GTEX-12WSK-0226-SM-5BC62",
"TCGA-US-A77G-01",
"TCGA-3A-A9IC-01",
"GTEX-Y8LW-1026-SM-5IFJY",
"TCGA-IB-AAUS-01",
"TCGA-HZ-A77P-01",
"GTEX-U8XE-2026-SM-3DB8S",
"TCGA-2J-AAB1-01",
"TCGA-IB-7897-01",
"GTEX-13U4I-1526-SM-5IFFF",
"GTEX-PLZ6-0726-SM-3P619",
"GTEX-13CF3-1026-SM-5LZWY",
"TCGA-HZ-8317-01",
"GTEX-1211K-1126-SM-5EGGB",
"TCGA-3A-A9I9-01",
"TCGA-IB-7654-01",
"GTEX-WHWD-0726-SM-4OORX",
"TCGA-3E-AAAZ-01",
"GTEX-11I78-0626-SM-5A5LZ",
"TCGA-F2-A8YN-01",
"TCGA-HZ-8005-01",
"GTEX-W5X1-0226-SM-5CHTO",
"GTEX-ZVT2-2026-SM-5NQ8Q",
"GTEX-ZYY3-0826-SM-5E44R",
"TCGA-HZ-8637-01",
"TCGA-F2-A44G-01",
"GTEX-OHPL-1026-SM-3MJGI",
"GTEX-146FR-0126-SM-5Q5F3",
"GTEX-11EQ9-1026-SM-5H134",
"GTEX-1399S-0326-SM-5IFFS",
"GTEX-ZYFG-0826-SM-5BC5T",
"GTEX-PX3G-1026-SM-48TZW",
"TCGA-HZ-A8P1-01",
"GTEX-W5WG-0826-SM-4RGNE",
"GTEX-OOBK-1026-SM-48TC2",
"TCGA-HZ-8638-01",
"TCGA-IB-7888-01",
"GTEX-XBED-0226-SM-47JY8",
"GTEX-S3XE-0526-SM-4AD4G",
"TCGA-IB-7652-01",
"TCGA-F2-A7TX-01",
"GTEX-RM2N-0326-SM-48FD8",
"TCGA-HZ-7923-01",
"TCGA-US-A774-01",
"TCGA-M8-A5N4-01",
"TCGA-2J-AABT-01",
"GTEX-ZYW4-2126-SM-59HJ9",
"GTEX-X5EB-0526-SM-46MVP",
"GTEX-YF7O-1326-SM-4W1ZR",
"TCGA-IB-AAUU-01",
"TCGA-RB-A7B8-01",
"TCGA-IB-AAUO-01",
"GTEX-132AR-1826-SM-5EGHR",
"GTEX-131XE-1926-SM-5IFER",
"GTEX-Q2AI-0426-SM-48U13",
"TCGA-2J-AABE-01",
"GTEX-QESD-0226-SM-447BH",
"TCGA-3A-A9IZ-01",
"TCGA-IB-A7LX-01",
"GTEX-WH7G-0826-SM-4LVMR",
"TCGA-3A-A9IV-01",
"TCGA-S4-A8RP-01",
"GTEX-WFON-0626-SM-4LVLX",
"TCGA-XD-AAUI-01",
"GTEX-ZYWO-1326-SM-5SI8X",
"GTEX-WFJO-0626-SM-4LVMC",
"TCGA-F2-7276-01",
"GTEX-QV31-0226-SM-447BO",
"TCGA-2L-AAQJ-01",
"GTEX-S4P3-0626-SM-4AD59",
"TCGA-2L-AAQA-01",
"TCGA-2L-AAQE-01",
"GTEX-WYVS-0926-SM-4SOJV",
"GTEX-YEC4-1326-SM-5IFHG",
"GTEX-ZEX8-1026-SM-4WKHE",
"TCGA-3A-A9IJ-01",
"TCGA-HZ-A49G-01",
"TCGA-FB-AAPU-01",
"TCGA-IB-AAUV-01",
"TCGA-FB-AAPS-01",
"TCGA-2J-AAB8-01",
"GTEX-111YS-1226-SM-5EGGJ",
"TCGA-YB-A89D-11",
"TCGA-IB-A5ST-01",
"GTEX-SIU7-0926-SM-4BRX1",
"TCGA-FB-A78T-01",
"GTEX-13FH7-1426-SM-5IFIC",
"TCGA-FB-A5VM-01",
"GTEX-WFG8-0326-SM-4LVN4",
"GTEX-XYKS-1226-SM-4BRVI",
"TCGA-FB-AAPP-01",
"TCGA-2J-AABU-01",
"TCGA-3A-A9IS-01",
"GTEX-144FL-1526-SM-5Q5CA",
"TCGA-2J-AABF-01",
"GTEX-R53T-0426-SM-48FEM",
"GTEX-QDVJ-1226-SM-48U1V",
"GTEX-Y3I4-0826-SM-4TT2A",
"GTEX-Y9LG-0726-SM-4VDS3",
"TCGA-HZ-A77Q-01",
"GTEX-Q2AH-0926-SM-48TZK",
"TCGA-IB-AAUP-01",
"GTEX-R55G-0326-SM-48FDM",
"TCGA-IB-7651-01",
"GTEX-11ONC-0526-SM-5BC57",
"GTEX-1399U-0926-SM-5IFHA",
"GTEX-WRHK-0226-SM-4MVOH",
"GTEX-11LCK-0226-SM-5A5M6",
"GTEX-117YX-0226-SM-5EGH6",
"GTEX-X15G-0726-SM-4PQZ5",
"GTEX-144GN-0826-SM-5LU5G",
"TCGA-HV-A5A3-01",
"TCGA-IB-7646-01",
"GTEX-OHPM-1026-SM-3LK74",
"TCGA-HV-A7OL-01",
"GTEX-PW2O-0826-SM-48TC5",
"TCGA-3E-AAAY-01",
"GTEX-QV44-0426-SM-4R1KF",
"TCGA-YY-A8LH-01",
"GTEX-P4PP-1026-SM-3NM9O",
"TCGA-YH-A8SY-01",
"TCGA-L1-A7W4-01",
"GTEX-QCQG-0426-SM-48U29",
"TCGA-2J-AAB4-01",
"GTEX-ZPIC-0926-SM-4WWFK",
"TCGA-2J-AABO-01",
"GTEX-ZT9W-0926-SM-57WFS",
"TCGA-IB-A6UG-01",
"TCGA-IB-7887-01",
"TCGA-F2-7273-01",
"TCGA-FB-AAQ2-01",
"GTEX-11VI4-0426-SM-5EGHZ",
"TCGA-IB-A5SS-01",
"GTEX-Y5V5-1026-SM-5LUAH",
"GTEX-VUSG-0326-SM-3GIJ7",
"GTEX-S95S-0726-SM-4B64H",
"GTEX-WYJK-2426-SM-4ONDQ",
"TCGA-2J-AABP-01",
"GTEX-U8XE-2026-SM-5CHQF",
"GTEX-13YAN-2126-SM-5Q5C4",
"TCGA-HZ-8315-01",
"TCGA-HZ-8636-01",
"TCGA-HV-A5A5-01",
"GTEX-13VXT-1226-SM-5LU3M",
"GTEX-S32W-0826-SM-4AD5Z",
"GTEX-ZG7Y-0326-SM-4WWEY",
"GTEX-YB5K-1826-SM-5IFJC",
"TCGA-HZ-7925-01",
"TCGA-IB-7647-01",
"GTEX-111CU-0526-SM-5EGHK",
"GTEX-13O61-2126-SM-5IJEO",
"TCGA-RB-AA9M-01",
"GTEX-14ICL-1126-SM-5S2RE",
"TCGA-PZ-A5RE-01",
"TCGA-HV-A5A6-01",
"GTEX-12WSL-0426-SM-5GCNX",
"TCGA-2J-AABK-01",
"TCGA-HZ-8519-01",
"GTEX-14AS3-0326-SM-5Q5DB",
"GTEX-132QS-0926-SM-5P9GB",
"TCGA-3A-A9IN-01",
"GTEX-13D11-2226-SM-5IFEO",
"TCGA-HZ-A8P0-01",
"TCGA-HZ-7926-01",
"GTEX-ZDTT-1126-SM-4WKFW",
"GTEX-PSDG-1526-SM-48TCY",
"TCGA-2J-AAB9-01",
"TCGA-IB-7891-01",
"TCGA-2L-AAQM-01",
"TCGA-2J-AABR-01",
"GTEX-13NZA-1726-SM-5J1NA",
"TCGA-2J-AABV-01",
"TCGA-XN-A8T3-01",
"TCGA-IB-7645-01",
"GTEX-ZTPG-1026-SM-5DUWP",
"TCGA-HV-A7OP-01",
"GTEX-ZF29-1126-SM-4WKGO",
"TCGA-FB-A4P5-01",
"TCGA-IB-A5SP-01",
"GTEX-11P7K-0526-SM-5BC5I",
"TCGA-S4-A8RO-01",
"GTEX-ZVZP-0626-SM-59HL5",
"GTEX-146FH-1826-SM-5QGQ7",
"GTEX-XMK1-0326-SM-4B652",
"TCGA-H6-8124-11",
"GTEX-13FTX-1226-SM-5IFGN",
"TCGA-IB-A7M4-01",
"GTEX-TMMY-1326-SM-4DXU9",
"TCGA-HZ-8003-01",
"TCGA-IB-AAUR-01",
"GTEX-12WSN-0826-SM-5GCOF",
"GTEX-ZYT6-1326-SM-5E453",
"TCGA-IB-7644-01",
"TCGA-3A-A9I7-01",
"TCGA-LB-A9Q5-01",
"TCGA-LB-A7SX-01",
"GTEX-WXYG-0826-SM-4ONC7",
"GTEX-11NSD-0526-SM-5A5LT",
"TCGA-2J-AABA-01",
"TCGA-HZ-A49I-01",
"TCGA-HZ-8001-01",
"GTEX-WI4N-1826-SM-4OOSF",
"TCGA-HV-A5A4-01",
"GTEX-SNOS-0926-SM-4DM7A",
"GTEX-1122O-0726-SM-5GIEV",
"TCGA-IB-AAUN-01",
"GTEX-WHPG-0326-SM-4M1XV",
"TCGA-IB-A5SQ-01",
"TCGA-H6-A45N-11",
"GTEX-X3Y1-0726-SM-3P5YU",
"GTEX-ZC5H-0826-SM-5N9FH",
"GTEX-13X6H-0626-SM-5LU53",
"TCGA-IB-8127-01",
"TCGA-HV-AA8V-01",
"GTEX-SE5C-0326-SM-4BRWX",
"GTEX-1128S-0826-SM-5GZZI",
"TCGA-F2-6880-01",
"TCGA-Q3-AA2A-01",
"TCGA-3A-A9IU-01",
"TCGA-US-A77E-01",
"TCGA-IB-AAUW-01",
"TCGA-3A-A9I5-01",
"GTEX-YEC3-0626-SM-5IFHZ",
"TCGA-H8-A6C1-01",
"TCGA-HZ-7924-01",
"GTEX-NPJ8-2126-SM-3MJGK",
"GTEX-R55D-1426-SM-48FEN",
"GTEX-ZAB5-0826-SM-5P9FU",
"GTEX-ZF2S-0426-SM-4WKGP",
"TCGA-IB-7893-01",
"TCGA-FB-AAPQ-01",
"GTEX-XQ8I-1926-SM-4BOOK",
"TCGA-US-A779-01",
"GTEX-SUCS-1426-SM-4DM5W",
"GTEX-1339X-1026-SM-5IFH5",
"GTEX-PWOO-0626-SM-48TZH",
"GTEX-13SLX-1326-SM-5S2QS",
"TCGA-IB-A5SO-01",
"GTEX-Y5LM-0526-SM-4V6G3",
"TCGA-HV-AA8X-01",
"TCGA-HZ-A77O-01",
"GTEX-UJHI-0626-SM-3DB8T",
"GTEX-P4QS-1026-SM-3NMCW",
"TCGA-HZ-7918-01",
"TCGA-2L-AAQI-01",
"TCGA-IB-AAUT-01",
"GTEX-139YR-1526-SM-5IFJ1",
"TCGA-IB-7885-01",
"GTEX-1399R-0426-SM-5IJE3"
],
"rows": 8,
"table": true,
"tojson": true
},
{
"name": "exprSet_hub1",
"title": "exprSet_hub1",
"object": "exprSet_hub1",
"class": [
"matrix",
"array"
],
"fields": [
"TCGA-3A-A9IO-01A",
"TCGA-US-A774-01A",
"TCGA-HZ-A49H-01A",
"TCGA-FB-A4P5-01A",
"TCGA-FB-AAPS-01A",
"TCGA-IB-AAUQ-01A",
"TCGA-HV-A5A5-01A",
"TCGA-H6-8124-01A",
"TCGA-IB-7654-01A",
"TCGA-3A-A9IJ-01A",
"TCGA-FB-AAQ6-01A",
"TCGA-IB-A7LX-01A",
"TCGA-2J-AABK-01A",
"TCGA-HZ-A9TJ-06A",
"TCGA-S4-A8RP-01A",
"TCGA-2L-AAQM-01A",
"TCGA-HZ-A77O-01A",
"TCGA-XD-AAUG-01A",
"TCGA-M8-A5N4-01A",
"TCGA-2L-AAQI-01A",
"TCGA-HZ-7919-01A",
"TCGA-HZ-8005-01A",
"TCGA-IB-AAUM-01A",
"TCGA-IB-7888-01A",
"TCGA-2J-AAB9-01A",
"TCGA-2L-AAQJ-01A",
"TCGA-IB-AAUU-01A",
"TCGA-Q3-A5QY-01A",
"TCGA-FB-AAQ1-01A",
"TCGA-HV-A5A3-01A",
"TCGA-IB-AAUO-01A",
"TCGA-IB-8127-01A",
"TCGA-FB-A545-01A",
"TCGA-YH-A8SY-01A",
"TCGA-IB-A5SQ-01A",
"TCGA-HV-A7OP-01A",
"TCGA-IB-7644-01A",
"TCGA-FB-AAQ2-01A",
"TCGA-US-A77J-01A",
"TCGA-F2-7273-01A",
"TCGA-3A-A9I9-01A",
"TCGA-US-A77G-01A",
"TCGA-IB-7893-01A",
"TCGA-S4-A8RM-01A",
"TCGA-IB-AAUW-01A",
"TCGA-FB-AAPZ-01A",
"TCGA-IB-AAUS-01A",
"TCGA-IB-AAUT-01A",
"TCGA-3A-A9IS-01A",
"TCGA-L1-A7W4-01A",
"TCGA-FB-A7DR-01A",
"TCGA-2J-AABO-01A",
"TCGA-3A-A9IH-01A",
"TCGA-PZ-A5RE-01A",
"TCGA-HZ-8003-01A",
"TCGA-3A-A9IB-01A",
"TCGA-H6-A45N-01A",
"TCGA-HZ-8001-01A",
"TCGA-IB-A7M4-01A",
"TCGA-2J-AAB8-01A",
"TCGA-2J-AABP-01A",
"TCGA-HZ-A77Q-01A",
"TCGA-HZ-7926-01A",
"TCGA-XN-A8T5-01A",
"TCGA-IB-A5ST-01A",
"TCGA-Z5-AAPL-01A",
"TCGA-IB-7652-01A",
"TCGA-IB-7886-01A",
"TCGA-FB-AAQ0-01A",
"TCGA-2L-AAQE-01A",
"TCGA-F2-6879-01A",
"TCGA-HV-A5A4-01A",
"TCGA-US-A779-01A",
"TCGA-FB-AAPP-01A",
"TCGA-HV-A5A6-01A",
"TCGA-HZ-8636-01A",
"TCGA-FB-A78T-01A",
"TCGA-IB-7646-01A",
"TCGA-RL-AAAS-01A",
"TCGA-US-A77E-01A",
"TCGA-IB-7887-01A",
"TCGA-IB-AAUP-01A",
"TCGA-IB-7885-01A",
"TCGA-Q3-AA2A-01A",
"TCGA-IB-7889-01A",
"TCGA-F2-A8YN-01A",
"TCGA-3E-AAAZ-01A",
"TCGA-HZ-8637-01A",
"TCGA-HZ-A4BH-01A",
"TCGA-IB-7890-01A",
"TCGA-XD-AAUL-01A",
"TCGA-HZ-7923-01A",
"TCGA-2J-AABE-01A",
"TCGA-FB-AAPU-01A",
"TCGA-3A-A9IC-01A",
"TCGA-2J-AABI-01A",
"TCGA-HZ-A4BK-01A",
"TCGA-YY-A8LH-01A",
"TCGA-3E-AAAY-01A",
"TCGA-3A-A9IZ-01A",
"TCGA-IB-A6UG-01A",
"TCGA-FB-A5VM-01A",
"TCGA-RB-AA9M-01A",
"TCGA-HZ-A49G-01A",
"TCGA-HV-AA8X-01A",
"TCGA-LB-A7SX-01A",
"TCGA-HZ-7922-01A",
"TCGA-2J-AABV-01A",
"TCGA-IB-AAUN-01A",
"TCGA-2L-AAQA-01A",
"TCGA-IB-A6UF-01A",
"TCGA-HZ-8638-01A",
"TCGA-IB-7651-01A",
"TCGA-2J-AABU-01A",
"TCGA-XN-A8T3-01A",
"TCGA-IB-7897-01A",
"TCGA-S4-A8RO-01A",
"TCGA-IB-8126-01A",
"TCGA-2J-AABF-01A",
"TCGA-US-A776-01A",
"TCGA-2J-AABT-01A",
"TCGA-IB-7891-01A",
"TCGA-XD-AAUI-01A",
"TCGA-RB-A7B8-01A",
"TCGA-XD-AAUH-01A",
"TCGA-2J-AAB6-01A",
"TCGA-2J-AAB4-01A",
"TCGA-FB-A4P6-01A",
"TCGA-IB-AAUV-01A",
"TCGA-3A-A9IL-01A",
"TCGA-3A-A9IN-01A",
"TCGA-FB-AAPQ-01A",
"TCGA-IB-A5SS-01A",
"TCGA-IB-7645-01A",
"TCGA-2J-AAB1-01A",
"TCGA-IB-A5SP-01A",
"TCGA-OE-A75W-01A",
"TCGA-F2-7276-01A",
"TCGA-3A-A9IX-01A",
"TCGA-3A-A9IV-01A",
"TCGA-HZ-8315-01A",
"TCGA-IB-AAUR-01A",
"TCGA-HZ-7925-01A",
"TCGA-HZ-7289-01A",
"TCGA-HZ-8519-01A",
"TCGA-F2-A44G-01A",
"TCGA-HV-A7OL-01A",
"TCGA-3A-A9IU-01A",
"TCGA-2J-AABR-01A",
"TCGA-2J-AABA-01A",
"TCGA-F2-6880-01A",
"TCGA-HV-AA8V-01A",
"TCGA-F2-A7TX-01A",
"TCGA-HZ-A77P-01A",
"TCGA-3A-A9J0-01A",
"TCGA-HZ-A8P1-01A",
"TCGA-2L-AAQL-01A",
"TCGA-HZ-8317-01A",
"TCGA-HZ-7920-01A",
"TCGA-HZ-A49I-01A",
"TCGA-HZ-A9TJ-01A",
"TCGA-YB-A89D-01A",
"TCGA-IB-7649-01A",
"TCGA-LB-A8F3-01A",
"TCGA-3A-A9IR-01A",
"TCGA-2J-AABH-01A",
"TCGA-3A-A9I7-01A",
"TCGA-3A-A9I5-01A",
"TCGA-LB-A9Q5-01A",
"TCGA-HZ-7924-01A",
"TCGA-HZ-8002-01A",
"TCGA-FB-AAPY-01A",
"TCGA-F2-A44H-01A",
"TCGA-IB-A5SO-01A",
"TCGA-FB-AAQ3-01A",
"TCGA-HZ-7918-01A",
"TCGA-H8-A6C1-01A"
],
"rows": 8,
"table": true,
"tojson": true
},
{
"name": "genes",
"title": "genes",
"object": "genes",
"class": [
"character"
],
"fields": [],
"table": false,
"tojson": true
},
{
"name": "lnc_anno",
"title": "lnc_anno",
"object": "lnc_anno",
"class": [
"data.frame"
],
"fields": [
"gene_name",
"gene_id",
"gene_type"
],
"rows": 14826,
"table": true,
"tojson": true
},
{
"name": "lnc_annov23",
"title": "lnc_annov23",
"object": "lnc_annov23",
"class": [
"data.frame"
],
"fields": [
"gene_name",
"gene_id",
"gene_type"
],
"rows": 14852,
"table": true,
"tojson": true
},
{
"name": "meta1",
"title": "meta1",
"object": "meta1",
"class": [
"data.frame"
],
"fields": [
"sample",
"event",
"X_PATIENT",
"time"
],
"rows": 177,
"table": true,
"tojson": true
},
{
"name": "mRNA_anno",
"title": "mRNA_anno",
"object": "mRNA_anno",
"class": [
"data.frame"
],
"fields": [
"gene_name",
"gene_id",
"gene_type"
],
"rows": 19814,
"table": true,
"tojson": true
},
{
"name": "mRNA_annov23",
"title": "mRNA_annov23",
"object": "mRNA_annov23",
"class": [
"data.frame"
],
"fields": [
"gene_name",
"gene_id",
"gene_type"
],
"rows": 19797,
"table": true,
"tojson": true
},
{
"name": "pkg_all",
"title": "pkg_all",
"object": "pkg_all",
"class": [
"data.frame"
],
"fields": [
"gpl",
"bioc_package",
"title"
],
"rows": 82,
"table": true,
"tojson": true
}
],
"_help": [
{
"page": "box_surv",
"title": "box_surv",
"topics": [
"box_surv"
]
},
{
"page": "cod",
"title": "cod",
"topics": [
"cod"
]
},
{
"page": "cor.full",
"title": "cor.test for all variables",
"topics": [
"cor.full"
]
},
{
"page": "cor.one",
"title": "cor.test for one variable with all variables",
"topics": [
"cor.one"
]
},
{
"page": "corheatmap",
"title": "corheatmap",
"topics": [
"corheatmap"
]
},
{
"page": "corscatterplot",
"title": "corscatterplot",
"topics": [
"corscatterplot"
]
},
{
"page": "deg",
"title": "deg",
"topics": [
"deg"
]
},
{
"page": "deseq_data",
"title": "deseq_data",
"topics": [
"deseq_data"
]
},
{
"page": "double_enrich",
"title": "draw enrichment bar plots for both up and down genes",
"topics": [
"double_enrich"
]
},
{
"page": "draw_boxplot",
"title": "draw boxplot for expression",
"topics": [
"draw_boxplot"
]
},
{
"page": "draw_heatmap",
"title": "draw a heatmap plot",
"topics": [
"draw_heatmap"
]
},
{
"page": "draw_heatmap2",
"title": "draw heatmap plots",
"topics": [
"draw_heatmap2"
]
},
{
"page": "draw_KM",
"title": "draw_KM",
"topics": [
"draw_KM"
]
},
{
"page": "draw_pca",
"title": "draw PCA plots",
"topics": [
"draw_pca"
]
},
{
"page": "draw_tsne",
"title": "draw_tsne",
"topics": [
"draw_tsne"
]
},
{
"page": "draw_venn",
"title": "draw a venn plot",
"topics": [
"draw_venn"
]
},
{
"page": "draw_volcano",
"title": "draw a volcano plot",
"topics": [
"draw_volcano"
]
},
{
"page": "draw_volcano2",
"title": "draw_volcano2",
"topics": [
"draw_volcano2"
]
},
{
"page": "dumd",
"title": "count unique values in every columns for data.frame",
"topics": [
"dumd"
]
},
{
"page": "edges_to_nodes",
"title": "edges_to_nodes",
"topics": [
"edges_to_nodes"
]
},
{
"page": "exists_anno_list",
"title": "exists_anno_list",
"topics": [
"exists_anno_list"
]
},
{
"page": "exp_boxplot",
"title": "exp_boxplot",
"topics": [
"exp_boxplot"
]
},
{
"page": "exp_hub1",
"title": "exp_hub1",
"topics": [
"exp_hub1"
]
},
{
"page": "exp_surv",
"title": "exp_surv",
"topics": [
"exp_surv"
]
},
{
"page": "exprSet_hub1",
"title": "exprSet_hub1",
"topics": [
"exprSet_hub1"
]
},
{
"page": "find_anno",
"title": "find annotation package or files",
"topics": [
"find_anno"
]
},
{
"page": "genes",
"title": "genes",
"topics": [
"genes"
]
},
{
"page": "geo_download",
"title": "geo_download",
"topics": [
"geo_download"
]
},
{
"page": "get_cgs",
"title": "get_cgs",
"topics": [
"get_cgs"
]
},
{
"page": "get_count_txt",
"title": "get count from GEO",
"topics": [
"get_count_txt"
]
},
{
"page": "get_deg",
"title": "get_deg",
"topics": [
"get_deg"
]
},
{
"page": "get_deg_all",
"title": "get_deg_all",
"topics": [
"get_deg_all"
]
},
{
"page": "get_gpl_txt",
"title": "get gpl txt from GEO",
"topics": [
"get_gpl_txt"
]
},
{
"page": "ggheat",
"title": "ggheat",
"topics": [
"ggheat"
]
},
{
"page": "hypertest",
"title": "hypertest",
"topics": [
"hypertest"
]
},
{
"page": "interaction_to_edges",
"title": "interaction_to_edges",
"topics": [
"interaction_to_edges"
]
},
{
"page": "intersect_all",
"title": "intersect_all",
"topics": [
"intersect_all"
]
},
{
"page": "lnc_anno",
"title": "lnc_anno",
"topics": [
"lnc_anno"
]
},
{
"page": "lnc_annov23",
"title": "lnc_annov23",
"topics": [
"lnc_annov23"
]
},
{
"page": "make_tcga_group",
"title": "make_tcga_group",
"topics": [
"make_tcga_group"
]
},
{
"page": "match_exp_cl",
"title": "match_exp_cl",
"topics": [
"match_exp_cl"
]
},
{
"page": "meta1",
"title": "meta1",
"topics": [
"meta1"
]
},
{
"page": "mRNA_anno",
"title": "mRNA_anno",
"topics": [
"mRNA_anno"
]
},
{
"page": "mRNA_annov23",
"title": "mRNA_annov23",
"topics": [
"mRNA_annov23"
]
},
{
"page": "multi_deg",
"title": "multi_deg",
"topics": [
"multi_deg"
]
},
{
"page": "multi_deg_all",
"title": "multi_deg_all",
"topics": [
"multi_deg_all"
]
},
{
"page": "pkg_all",
"title": "pkg_all",
"topics": [
"pkg_all"
]
},
{
"page": "plcortest",
"title": "plcortest",
"topics": [
"plcortest"
]
},
{
"page": "plot_deg",
"title": "plot_deg",
"topics": [
"plot_deg"
]
},
{
"page": "point_cut",
"title": "point_cut",
"topics": [
"point_cut"
]
},
{
"page": "quick_enrich",
"title": "quick_enrich",
"topics": [
"quick_enrich"
]
},
{
"page": "risk_plot",
"title": "risk_plot",
"topics": [
"risk_plot"
]
},
{
"page": "sam_filter",
"title": "sam_filter",
"topics": [
"sam_filter"
]
},
{
"page": "surv_cox",
"title": "surv_cox",
"topics": [
"surv_cox"
]
},
{
"page": "surv_KM",
"title": "surv_KM",
"topics": [
"surv_KM"
]
},
{
"page": "t_choose",
"title": "t_choose",
"topics": [
"t_choose"
]
},
{
"page": "trans_array",
"title": "trans_array",
"topics": [
"trans_array"
]
},
{
"page": "trans_entrezexp",
"title": "trans_entrezexp",
"topics": [
"trans_entrezexp"
]
},
{
"page": "trans_exp",
"title": "trans_exp",
"topics": [
"trans_exp"
]
},
{
"page": "trans_exp_new",
"title": "trans_exp_new",
"topics": [
"trans_exp_new"
]
},
{
"page": "union_all",
"title": "union_all",
"topics": [
"union_all"
]
}
],
"_readme": "https://github.com/xjsun1221/tinyarray/raw/HEAD/README.md",
"_rundeps": [
"abind",
"aisdk",
"AnnotationDbi",
"ape",
"aplot",
"askpass",
"backports",
"base64enc",
"Biobase",
"BiocGenerics",
"BiocManager",
"Biostrings",
"bit",
"bit64",
"blob",
"boot",
"broom",
"bslib",
"cachem",
"callr",
"car",
"carData",
"checkmate",
"cli",
"cluster",
"clusterProfiler",
"colorspace",
"commonmark",
"corrplot",
"cowplot",
"cpp11",
"crayon",
"curl",
"data.table",
"DBI",
"Deriv",
"digest",
"doBy",
"DOSE",
"dplyr",
"enrichit",
"enrichplot",
"evaluate",
"exactRankTests",
"farver",
"fastmap",
"fontawesome",
"fontBitstreamVera",
"fontLiberation",
"fontquiver",
"forecast",
"foreign",
"Formula",
"fracdiff",
"fs",
"gdtools",
"generics",
"ggforce",
"ggfun",
"ggiraph",
"ggnewscale",
"ggplot2",
"ggplotify",
"ggpubr",
"ggrepel",
"ggsci",
"ggsignif",
"ggtangle",
"ggtext",
"ggtree",
"glue",
"GO.db",
"GOSemSim",
"gridExtra",
"gridGraphics",
"gridtext",
"gson",
"gtable",
"highr",
"Hmisc",
"htmlTable",
"htmltools",
"htmlwidgets",
"httr",
"httr2",
"igraph",
"IRanges",
"isoband",
"jpeg",
"jquerylib",
"jsonlite",
"KEGGREST",
"knitr",
"labeling",
"lattice",
"lazyeval",
"lifecycle",
"limma",
"litedown",
"lme4",
"lmtest",
"magrittr",
"markdown",
"MASS",
"Matrix",
"MatrixModels",
"maxstat",
"memoise",
"mgcv",
"microbenchmark",
"mime",
"minqa",
"modelr",
"mvtnorm",
"nlme",
"nloptr",
"nnet",
"numDeriv",
"openssl",
"patchwork",
"pbkrtest",
"pheatmap",
"pillar",
"pkgconfig",
"plyr",
"png",
"polyclip",
"polynom",
"processx",
"ps",
"purrr",
"quantreg",
"qvalue",
"R6",
"rappdirs",
"rbibutils",
"RColorBrewer",
"Rcpp",
"RcppArmadillo",
"RcppEigen",
"Rdpack",
"reformulas",
"reshape2",
"rlang",
"rmarkdown",
"rpart",
"RSQLite",
"rstatix",
"rstudioapi",
"S4Vectors",
"S7",
"sass",
"scales",
"scatterpie",
"Seqinfo",
"SparseM",
"statmod",
"stringi",
"stringr",
"survival",
"survminer",
"sys",
"systemfonts",
"tibble",
"tidydr",
"tidyr",
"tidyselect",
"tidytree",
"timeDate",
"tinytex",
"treeio",
"tweenr",
"urca",
"utf8",
"vctrs",
"viridisLite",
"withr",
"xfun",
"xml2",
"XVector",
"yaml",
"yulab.utils",
"zoo"
],
"_score": 5.74499667403856,
"_indexed": true,
"_nocasepkg": "tinyarray",
"_universes": [
"xjsun1221",
"xiaojiesun"
],
"_binaries": [
{
"r": "4.7.0",
"os": "linux",
"version": "2.4.2",
"date": "2026-05-11T09:09:38.000Z",
"distro": "noble",
"commit": "e1b5df306627ad7e11d93278ec64a67ae80cd299",
"fileid": "66ce8b9f3795cd7cff44e2c2c651c8d256efad86f8a5f9532c9c7276800f47b5",
"status": "success",
"check": "OK",
"buildurl": "https://github.com/r-universe/xjsun1221/actions/runs/25660497073"
},
{
"r": "4.6.0",
"os": "linux",
"version": "2.4.2",
"date": "2026-05-11T09:09:29.000Z",
"distro": "noble",
"commit": "e1b5df306627ad7e11d93278ec64a67ae80cd299",
"fileid": "0e796448d5b012360ffd784220f389b638ee83c67cc565a3242f1bd08e374963",
"status": "success",
"check": "OK",
"buildurl": "https://github.com/r-universe/xjsun1221/actions/runs/25660497073"
},
{
"r": "4.5.3",
"os": "mac",
"version": "2.4.2",
"date": "2026-05-11T09:08:57.000Z",
"commit": "e1b5df306627ad7e11d93278ec64a67ae80cd299",
"fileid": "64c0cc2e0b67fc13483609eb03710da459ae930c0e597004a05812a8a290084b",
"status": "success",
"check": "OK",
"buildurl": "https://github.com/r-universe/xjsun1221/actions/runs/25660497073"
},
{
"r": "4.6.0",
"os": "mac",
"version": "2.4.2",
"date": "2026-05-11T09:08:17.000Z",
"commit": "e1b5df306627ad7e11d93278ec64a67ae80cd299",
"fileid": "9836e0c96d49c07f2b17dead94a53ee4b466cfbf58db1b0879a3c7c9261f48b8",
"status": "success",
"check": "OK",
"buildurl": "https://github.com/r-universe/xjsun1221/actions/runs/25660497073"
},
{
"r": "4.7.0",
"os": "win",
"version": "2.4.2",
"date": "2026-05-11T09:07:37.000Z",
"commit": "e1b5df306627ad7e11d93278ec64a67ae80cd299",
"fileid": "faa7c673a1a70744602eee8fb8709aed411e6729d43e94aebfef01eb5fdc1209",
"status": "success",
"check": "OK",
"buildurl": "https://github.com/r-universe/xjsun1221/actions/runs/25660497073"
},
{
"r": "4.5.3",
"os": "win",
"version": "2.4.2",
"date": "2026-05-11T09:07:40.000Z",
"commit": "e1b5df306627ad7e11d93278ec64a67ae80cd299",
"fileid": "c4f803e31b0a64a30dfd427244a0cf683533c09218ac68a77201d383cbe7556c",
"status": "success",
"check": "OK",
"buildurl": "https://github.com/r-universe/xjsun1221/actions/runs/25660497073"
},
{
"r": "4.6.0",
"os": "win",
"version": "2.4.2",
"date": "2026-05-11T09:07:28.000Z",
"commit": "e1b5df306627ad7e11d93278ec64a67ae80cd299",
"fileid": "d8daaa5b7301f8298193437e44aeeeb3ea374534a3e27d8693c5657453c15ad9",
"status": "success",
"check": "OK",
"buildurl": "https://github.com/r-universe/xjsun1221/actions/runs/25660497073"
},
{
"r": "4.6.0",
"os": "wasm",
"version": "2.4.2",
"date": "2026-05-22T11:33:38.000Z",
"commit": "e1b5df306627ad7e11d93278ec64a67ae80cd299",
"fileid": "7f31b5c60201c71af266147620208a05a9249160ebbdeeeec284e25be467c839",
"status": "success",
"buildurl": "https://github.com/r-universe/xjsun1221/actions/runs/25660497073"
}
]
}